Doctoral (PhD) student position in genomic analyses of neurons - Hiring in process/Finished, not possible to apply

Do you want to contribute to top quality medical research?

To be a doctoral student means to devote oneself to a research project under supervision of experienced researchers and following an individual study plan. For a doctoral degree, the equivalent of four years of full-time doctoral education is required.

The research group

A PhD position is available in the lab of Rickard Sandberg at the Department of Cell and Molecular Biology (CMB). The lab is located in Biomedicum, a top-notch research building with a modern infrastructure and equipment. Rickard’s lab is focusing on developing genomic technologies to study tissues at the single-cell level, and his lab has developed some of the commonly used technologies in the field. These methods are used to study how the genome is controlled, including when and how genes are turned on, and which RNA isoform that is being generated.

The doctoral student project and the duties of the doctoral student

This PhD project is focused on investigating how alternative splicing is functionally affecting our brain. The project is to a large degree dependent on computational analyses of deep Smart-seq data from the brain to elucidate the extent and general rules for how splicing affects the brains cell types and functional connections. This has relevance for human disease. The candidate will handle large data and learn all aspects from sequencing technologies, bioinformatics, computational biology, experimental neuroscience, and exploring high-dimensional data for biological patterns.

What do we offer?

A creative and inspiring environment full of expertise and curiosity. Karolinska Institutet is one of the world's leading medical universities. Our vision is to pursue the development of knowledge about life and to promote a better health for all. At Karolinska Institutet, we conduct successful medical research and hold the largest range of medical education in Sweden. As a doctoral student you are offered an individual research project, a well-educated supervisor, a vast range of elective courses and the opportunity to work in a leading research group. Karolinska Institutet collaborates with prominent universities from all around the world, which ensures opportunities for international exchanges. You will be employed on a doctoral studentship which means that you receive a contractual salary. Employees also have access to our modern gym for free and receive reimbursements for medical care.

Eligibility requirements for doctoral education

In order to participate in the selection for a doctoral position, you must meet the following general (A) and specific (B) eligibility requirements at latest by the application deadline.

It is your responsibility to certify eligibility by following the instructions on the web page Entry requirements (eligibility) for doctoral education.

A) General eligibility requirement

You meet the general eligibility requirement for doctoral/third-cycle/PhD education if you:

1. have been awarded a second-cycle/advanced/master qualification (i.e. master degree), or
2. have satisfied the requirements for courses comprising at least 240 credits of which at least 60 credits were awarded in the advanced/second-cycle/master level, or
3. have acquired substantially equivalent knowledge in some other way in Sweden or abroad.*

Follow the instructions on the web page Entry requirements (eligibility) for doctoral education.

*If you claim equivalent knowledge, follow the instructions on the web page Assessing equivalent knowledge for general eligibility for doctoral education.

B) Specific eligibility requirement

You meet the specific eligibility requirement for doctoral/third-cycle/PhD education if you:

- Show proficiency in English equivalent to the course English B/English 6 at Swedish upper secondary school.

Follow the instructions on the web page English language requirements for doctoral education.

Verification of your documents Karolinska Institutet checks the authenticity of your documents. Karolinska Institutet reserves the right to revoke admission if supporting documents are discovered to be fraudulent. Submission of false documents is a violation of Swedish law and is considered grounds for legal action.

(A) and (B) can only be certified by the documentation requirement for doctoral education.

Skills and personal qualities

The application should have a Master degree in biomedicine, molecular biology or similar, and the applicant needs to be able to communicate efficiently and pleasantly, both in writing and in person.

The applicant should be a proficient programmer, with detailed experience in R or Python, and be comfortable writing longer analyses workflows in e.g. Jupyter notebook.

It is meriting with previous research experience with single-cell RNA-seq data, in particular Smart-seq like data.

It is further meriting with previous research experience with computational methods, in particular methods used for single-cell analyses of splicing.

Terms and conditions

The doctoral student will be employed on a doctoral studentship maximum 4 years full-time.

--[Video about Karolinska Institutet, how we all work towards "a better health for all"] -

Application process

Submit your application and supporting documents through the Varbi recruitment system. Use the button in the top right corner and follow the instructions. We prefer that your application is written in English, but you can also apply in Swedish.

Your application must contain the following documents:

- A personal letter and a curriculum vitae
- Degree projects and previous publications, if any
- Any other documentation showing the desirable skills and personal qualities described above
- Documents certifying your general eligibility (see A above)
- Documents certifying your specific eligibility (see B above)

Selection

A selection will be made among eligible applicants on the basis of the ability to benefit from doctoral education. The qualifications of the applicants will be evaluated on an overall basis.

Karolinska Institutet uses the following bases of assessment:

- Documented subject knowledge of relevance to the area of research
- Analytical skill
- Other documented knowledge or experience that may be relevant to doctoral studies in the subject.

All applicants will be informed when the recruitment is completed.

Read more about the Department of Cell and Molecular Biology (CMB)  
Read more about Sandberg’s research group 

Want to make a difference? Join us and contribute to better health for all