PhD position in sarcoma genomics

Do you want to contribute to top quality medical research?

To be a doctoral student means to devote oneself to a research project under supervision of experienced researchers and following an individual study plan. For a doctoral degree, the equivalent of four years of full-time doctoral education is required.

The research group

The position is associated with Felix Haglund de Flons research team. The research group studies genomic profiling of sarcoma for treatment prognosis and diagnostic biomarkers.

The doctoral student project and the duties of the doctoral student

You will analyse large multi-OMICS data sets, mainly genomic data, from sarcomas. Your training will focus on bioinformatics and biostatistics and be part of a research environment were you can develop these skills. There are two main projects i) compile and analyze large scale data sets, including prospective profiling of new tumors, and detailed analysis of new genetic changes or genomic patterns in rare sarcomas.

What do we offer?

A creative and inspiring environment full of expertise and curiosity. Karolinska Institutet is one of the world's leading medical universities. Our vision is to pursue the development of knowledge about life and to promote a better health for all. At Karolinska Institutet, we conduct successful medical research and hold the largest range of medical education in Sweden. As a doctoral student you are offered an individual research project, a well-educated supervisor, a vast range of elective courses and the opportunity to work in a leading research group. Karolinska Institutet collaborates with prominent universities from all around the world, which ensures opportunities for international exchanges. You will be employed on a doctoral studentship which means that you receive a contractual salary. Employees also have access to our modern gym for free and receive reimbursements for medical care.

Eligibility requirements for doctoral education

In order to participate in the selection for a doctoral position, you must meet the following general (A) and specific (B) eligibility requirements at latest by the application deadline.

It is your responsibility to certify eligibility by following the instructions on the web page Entry requirements (eligibility) for doctoral education.

A) General eligibility requirement

You meet the general eligibility requirement for doctoral/third-cycle/PhD education if you:

1. have been awarded a second-cycle/advanced/master qualification (i.e. master degree), or
2. have satisfied the requirements for courses comprising at least 240 credits of which at least 60 credits were awarded in the advanced/second-cycle/master level, or
3. have acquired substantially equivalent knowledge in some other way in Sweden or abroad.*

Follow the instructions on the web page Entry requirements (eligibility) for doctoral education.

*If you claim equivalent knowledge, follow the instructions on the web page Assessing equivalent knowledge for general eligibility for doctoral education.

B) Specific eligibility requirement

You meet the specific eligibility requirement for doctoral/third-cycle/PhD education if you:

- Show proficiency in English equivalent to the course English B/English 6 at Swedish upper secondary school.

Follow the instructions on the web page English language requirements for doctoral education.

Verification of your documents Karolinska Institutet checks the authenticity of your documents. Karolinska Institutet reserves the right to revoke admission if supporting documents are discovered to be fraudulent. Submission of false documents is a violation of Swedish law and is considered grounds for legal action.

(A) and (B) can only be certified by the documentation requirement for doctoral education.

Skills and personal qualities

We are looking for a highly motivated and intelligent person with great attention to detail. You have a background in bioinformatics, with previous practical experience in cancer bioinformatics. You can code at least one coding language which is relevant for the position. You have a Masters degree in an appropriate field. To succeed in the environment, the candidate must have the ability to work independently, to co-operate, be ambitious and take initiative.

The position includes the following tasks:

• 1) Run bioinformatic pipelines for processing genomic data from cancer patients. This includes analysing:
  1. RNA, whole transcriptome.
  2. DNA, whole genome.
  3. DNA, panel data.
• 2) Developing and improving pipelines for cancer genomic analysis. This includes:
  1. Transcriptome analysis.
  2. Genome analysis.
• 3) Summarize genomic data form large cohorts of cancer patients.

Meritorious

- Experience of the tasks 1) - 3) above.

- Experience from working in an environment for developing software according to e.g. GitHub according to best practices.

- Experience of basic data analysis in eg. R-studio for evaluation of results.

Terms and conditions

The doctoral student will be employed on a doctoral studentship maximum 4 years full-time.

Application process

Submit your application and supporting documents through the Varbi recruitment system. Use the button in the top right corner and follow the instructions. We prefer that your application is written in English, but you can also apply in Swedish.

Your application must contain the following documents:

- A personal letter and a curriculum vitae
- Degree projects and previous publications, if any
- Any other documentation showing the desirable skills and personal qualities described above
- Documents certifying your general eligibility (see A above)
- Documents certifying your specific eligibility (see B above)

Selection

A selection will be made among eligible applicants on the basis of the ability to benefit from doctoral education. The qualifications of the applicants will be evaluated on an overall basis.

Karolinska Institutet uses the following bases of assessment:

- Documented subject knowledge of relevance to the area of research
- Analytical skill
- Other documented knowledge or experience that may be relevant to doctoral studies in the subject.

All applicants will be informed when the recruitment is completed.

https://ki.se/en/people/felix-haglund

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